Sequence Analysis Software
[Download] Given a cis-regulatory element, search for putative co-regulated
sequences in the genome as sequences with similar word content (word profile hits). Developed by Garmay Leung.
[Download] (platform independent): Graphic Alignment Tool for Comparative Sequence Analysis. GATA was developed by David Nix in our lab.
[Download](ANSI C code): Transcription Factor Expectation Maximization, an algorithm for detecting DNA regulatory motifs by incorperating positional trends in information content.