Xiao-Yong Li, Ph.D.

Staff from 2008

Ph.D. in 1991 in Biochemistry with William McClude

Establishment of enhancer identity in the early Drosophila embryo

Li XY, Harrison MM, Villalta JE, Kaplan T, Eisen MB (2014). Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition.
Journal  PubMed  PMC  Preprint  Data:GEO  

Paris M, Kaplan T, Li XY, Villalta JE, Lott SE et al. (2013). Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression.
Journal  PubMed  PMC  Web  Data:GEO  

Harrison MM, Li XY, Kaplan T, Botchan MR, Eisen MB (2011). Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition.
Journal  PubMed  PMC  

Li XY, Thomas S, Sabo PJ, Eisen MB, Stamatoyannopoulos JA et al. (2011). The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding.
Journal  PubMed  PMC  

Kaplan T, Li XY, Sabo PJ, Thomas S, Stamatoyannopoulos JA et al. (2011). Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development.
Journal  PubMed  PMC  

Bradley RK, Li XY, Trapnell C, Davidson S, Pachter L et al. (2010). Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species.
Journal  PubMed  PMC  Web  

MacArthur S, Li XY, Li J, Brown JB, Chu HC et al. (2009). Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions.
Journal  PubMed  PMC  

Li XY, MacArthur S, Bourgon R, Nix DA, Pollard DA et al. (2008). Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.
Journal  PubMed  PMC  

Misulovin Z, Schwartz YB, Li XY, Kahn TG, Gause M et al. (2007). Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome.
Journal  PubMed  PMC  

Moses AM, Pollard DA, Nix DA, Iyer VN, Li XY et al. (2006). Large-scale turnover of functional transcription factor binding sites in Drosophila.
Journal  PubMed  PMC  Software:CisEvolver